Molecule Library
Explore 29 curated biomolecules across amino acids, lipids, carbohydrates, and reference proteins.
Alanine
ALA (A)Simplest chiral amino acid with a methyl side chain. Abundant in proteins and key in the glucose-alanine cycle.
Valine
VAL (V)Branched-chain amino acid with an isopropyl side chain. Important for muscle metabolism and tissue repair.
Leucine
LEU (L)Essential branched-chain amino acid that directly stimulates mammalian target of rapamycin (mTOR) protein synthesis.
Isoleucine
ILE (I)Isomer of leucine with two stereocenters. Essential for hemoglobin synthesis and energy regulation.
Proline
PRO (P)Unique cyclic amino acid with a secondary amine (imino acid). Induces bends and kinks in protein alpha-helices.
Phenylalanine
PHE (F)Highly hydrophobic aromatic amino acid containing a benzyl side chain; precursor to tyrosine and neurotransmitters.
Methionine
MET (M)Sulfur-containing essential amino acid; universal initiating amino acid in eukaryotic protein synthesis (AUG codon).
Tryptophan
TRP (W)Largest amino acid with a bicyclic indole ring. Exhibits intrinsic protein fluorescence and serves as serotonin precursor.
Glycine
GLY (G)Smallest amino acid with a single hydrogen atom side chain; only achiral amino acid, providing immense peptide backbone flexibility.
Cysteine
CYS (C)Contains a reactive thiol (-SH) group capable of forming covalent disulfide bonds crucial for protein tertiary structure.
Serine
SER (S)Polar amino acid with a primary alcohol; frequently phosphorylated in cell signaling and present in catalytic triads.
Threonine
THR (T)Contains a secondary alcohol and two stereocenters. Major site of O-linked glycosylation and phosphorylation.
Tyrosine
TYR (Y)Aromatic amino acid with a phenolic hydroxyl group. Target for receptor tyrosine kinases and precursor to catecholamines.
Asparagine
ASN (N)Carboxamide-bearing derivative of aspartate; primary consensus site for N-linked glycosylation (Asn-X-Ser/Thr).
Glutamine
GLN (Q)Most abundant free amino acid in human blood. Key nitrogen donor for purine and pyrimidine biosynthesis.
Lysine
LYS (K)Basic amino acid with a flexible butylamino side chain; carries positive charge at pH 7.4. Major histone methylation site.
Arginine
ARG (R)Highly basic amino acid with a resonance-stabilized guanidinium group (pKa ~12.5), consistently protonated at physiological pH.
Histidine
HIS (H)Aromatic imidazole side chain with near-neutral pKa (~6.0); acts as versatile general acid-base catalyst in enzymes.
Aspartic Acid
ASP (D)Dicarboxylic amino acid; fully deprotonated as aspartate at physiological pH. Critical for coordinating catalytic metal cations.
Glutamic Acid
GLU (E)Carboxylate side chain acting as major excitatory neurotransmitter (glutamate) in the central nervous system.
Cholesterol
Essential polycyclic amphipathic sterol modulating eukaryotic plasma membrane fluidity and steroid precursor.
Dipalmitoylphosphatidylcholine (DPPC)
Major phospholipid component of pulmonary surfactant preventing alveolar collapse during respiration.
Palmitic Acid
16-carbon saturated fatty acid; first fatty acid produced during lipogenesis in animals.
D-Glucose
Primary hexose monosaccharide and energy currency of cellular glycolysis and respiration.
D-Ribose
Aldopentose sugar forming the central structural backbone of ribonucleic acid (RNA) and ATP.
Sucrose
Non-reducing disaccharide composed of alpha-D-glucopyranose and beta-D-fructofuranose linked by an alpha-1,2-glycosidic bond.
Crambin
Small seed storage plant protein from Crambe abyssinica. High-resolution benchmark model containing 3 disulfide bonds.
Green Fluorescent Protein (GFP)
Beta-barrel protein from Aequorea victoria exhibiting bioluminescent green fluorescence via an autocatalytic Ser65-Tyr66-Gly67 chromophore.
Insulin (2-Chain Monomer)
Essential peptide hormone regulating carbohydrate and fat metabolism, composed of A and B chains linked by two interchain disulfide bonds.